Meta BioBank
  1. Meta BioBank

metabiobank

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  1. Meta BioBank
  2. metabiobank

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AuthorCommitMessageCommit dateBuilds
Tomasz GubałaTomasz Gubała
f2a81c3347fupdated to new PLGrid manual link; d2m
Tomasz GubałaTomasz Gubała
e6c6ae960f2removed old openid ca cert
Tomasz GubałaTomasz Gubała
291fe0c9bdfnew openid ca cert
Tomasz GubalaTomasz Gubala
cc25a651dcfMerge pull request #122 in MBB/metabiobank from ordering-tweaks to master # By Tomasz Szymczyszyn # Via Tomasz Szymc...
Tomasz GubalaTomasz Gubala
2423ed7dd76Merge pull request #121 in MBB/metabiobank from import-fixes to master # By Tomasz Szymczyszyn # Via Tomasz Szymczys...
Tomasz GubalaTomasz Gubala
194c7202ab4Merge pull request #120 in MBB/metabiobank from data-categories to master # By Tomasz Szymczyszyn # Via Tomasz Szymc...
Tomasz SzymczyszynTomasz Szymczyszyn
4945e1929cbSome more ordering fixes
Tomasz SzymczyszynTomasz Szymczyszyn
f30de466df5Fixes for import mapping view: * do not show unmapped columns as mapped to comments * show correct mapping items for...
Tomasz SzymczyszynTomasz Szymczyszyn
c13ca088d4eAllow to set data categories for sample collections
Tomasz GubałaTomasz Gubała
8977b982f14front page tooltip position fix; d2m
Tomasz GubałaTomasz Gubała
4102b9572dfbiobanks visible_for scope fix; d2m
Tomasz GubalaTomasz Gubala
626dce3fdd8Merge pull request #119 in MBB/metabiobank from import_seeds to master # By Piotr Nowakowski # Via Piotr Nowakowski ...
Tomasz GubalaTomasz Gubala
3a500cccf3dMerge pull request #117 in MBB/metabiobank from biobanks_list to master # By gubala (4) and Tomasz Szymczyszyn (3) #...
Tomasz SzymczyszynTomasz Szymczyszyn
8cf19e08bd1Fix IE10 action box width issue
Piotr NowakowskiPiotr Nowakowski
b2d67574d5bProvide seeds to load default data import mapping for all existing users in production environment.
Tomasz GubalaTomasz Gubala
99bc8c135c1Merge pull request #118 in MBB/metabiobank from update_sample_model to master # By Piotr Nowakowski (1) and gubala (...
Tomasz GubałaTomasz Gubała
bdffde74125new sample presentation table
Piotr NowakowskiPiotr Nowakowski
f2ff39073d0Refactor Sample model to accommodate MBB import files.
Tomasz GubałaTomasz Gubała
18e7df436e8removed extra new biobank action
Tomasz GubałaTomasz Gubała
2fa62e0ce69action labels fix for same height in most cases
Tomasz SzymczyszynTomasz Szymczyszyn
6a6de0d45d9Merge branch 'biobanks_list' of ssh://git.plgrid.pl:7999/mbb/metabiobank into biobanks_list
Tomasz SzymczyszynTomasz Szymczyszyn
af49b3b3791Restore "Add biobank" action on the main page and tweak css for boxed content
Tomasz GubałaTomasz Gubała
1e19d0f57bdbetter navbar name
Tomasz SzymczyszynTomasz Szymczyszyn
9bc8a02eb91Minor fixes: * use th instead of td in table header * guard against nil when summing samples
Tomasz GubałaTomasz Gubała
a83026d7aafbiobanks list
Tomasz GubalaTomasz Gubala
26f6706769cMerge pull request #116 in MBB/metabiobank from nueves-fixes to master # By Tomasz Szymczyszyn # Via Tomasz Szymczys...
Tomasz SzymczyszynTomasz Szymczyszyn
8e19dd2d6b1Escape special chars in search queries
Tomasz SzymczyszynTomasz Szymczyszyn
6a7a99cfc30I18n tweaks
Tomasz SzymczyszynTomasz Szymczyszyn
a84dca841a2Fix SC factory producing invalid records
Tomasz SzymczyszynTomasz Szymczyszyn
65870623b7eShow blank sample collection as invalid in import form
Tomasz SzymczyszynTomasz Szymczyszyn
10bd0f78b1aValidate numericality of SampleCollection#samples_count_override
Tomasz SzymczyszynTomasz Szymczyszyn
1bc64031783Ensure sensible default record ordering
Tomasz SzymczyszynTomasz Szymczyszyn
b3b2a6613d2Add missing translation for spoofed file error message
Tomasz SzymczyszynTomasz Szymczyszyn
a1938541417Fix i18n missing/unused keys
Tomasz SzymczyszynTomasz Szymczyszyn
cf3e32038d1Merge pull request #115 in MBB/metabiobank from data_import to master # By Tomasz Szymczyszyn (22) and others # Via ...
Piotr NowakowskiPiotr Nowakowski
de44a290a19Fix bug in string sanitization code.
Piotr NowakowskiPiotr Nowakowski
ba657149a6bFix bugs in assignment of patient age and anatomical part
Piotr NowakowskiPiotr Nowakowski
49b0cc97b74Fix bug in parsing age info
Piotr NowakowskiPiotr Nowakowski
0fbe58eaa3cFix bug in parsing storage temperature info
Tomasz GubałaTomasz Gubała
d7f280c8630turned submenu on for imports views
Tomasz GubałaTomasz Gubała
63184981914typo fixed
Tomasz GubałaTomasz Gubała
a8f9f3e62dashowing the second hint now
Tomasz GubałaTomasz Gubała
14e02acf829added two missing EN locales
Tomasz GubałaTomasz Gubała
775a730d4d7translated or
Piotr NowakowskiPiotr Nowakowski
10a6b3ef67eMerge remote-tracking branch 'origin/data_import' into data_import
Piotr NowakowskiPiotr Nowakowski
3d63b08b1d5Provide information regarding all required mapping terms
Tomasz SzymczyszynTomasz Szymczyszyn
abd6aed2025Protect against XSS via CSV upload
Tomasz SzymczyszynTomasz Szymczyszyn
fb1f3336762Allow to import samples into a new collection even if some collections already exist
Piotr NowakowskiPiotr Nowakowski
1d98415ab2cFix issues identified during code review; provide additional descriptions for users.
Tomasz SzymczyszynTomasz Szymczyszyn
63977e57845Add specs for owner/imports#edit
Tomasz SzymczyszynTomasz Szymczyszyn
2e53e98c776Better order of terms in mapping select
Tomasz SzymczyszynTomasz Szymczyszyn
5c2a88c57f4Add specs for owner/imports#update
Tomasz SzymczyszynTomasz Szymczyszyn
9874ba37078Table layout tweak
Tomasz SzymczyszynTomasz Szymczyszyn
8d9a399690bAdd some specs for owner/imports#{new,create}
Tomasz SzymczyszynTomasz Szymczyszyn
6de62936bbfPurge old imports
Tomasz SzymczyszynTomasz Szymczyszyn
add5259d316Add import error summary when some samples could not be processed
Tomasz SzymczyszynTomasz Szymczyszyn
e973ec787baShow validation error when single term is chose multiple times in a mapping
Tomasz SzymczyszynTomasz Szymczyszyn
58449252a2cHas header checkbox position tweak
Tomasz SzymczyszynTomasz Szymczyszyn
c4ad3b872b3Allow to create new import mapping / use existing one
Tomasz SzymczyszynTomasz Szymczyszyn
e22bf311144Tweak Import model: * make it belong to sample collection instead of biobank * allow to create it given name of new ...
Tomasz SzymczyszynTomasz Szymczyszyn
fb8aec8b9d7Some wording tweaks
Tomasz SzymczyszynTomasz Szymczyszyn
4a4a0aeb05fWIP (semi working) Allow to create new import mapping / use existing one
Tomasz SzymczyszynTomasz Szymczyszyn
be89d266d71Initial work on mapping validation
Tomasz SzymczyszynTomasz Szymczyszyn
6b45e421bcbMake new mapping form persistent
Tomasz SzymczyszynTomasz Szymczyszyn
24a607dfc2aAdd quiet_assets gem
Tomasz SzymczyszynTomasz Szymczyszyn
4fa7323141aWIP Add ImportsController and views
Tomasz SzymczyszynTomasz Szymczyszyn
23020c38758Add ImportMappingItem#column_name attribute
Tomasz SzymczyszynTomasz Szymczyszyn
2c7ea122589Add Import model and basic specs
Tomasz SzymczyszynTomasz Szymczyszyn
f97935bd347Add missing presence validation for ImportMapping#label
Piotr NowakowskiPiotr Nowakowski
d6658f58dfbRemove patient IDs in export files and delete some extraneous whitespace
Piotr NowakowskiPiotr Nowakowski
ae6a4add965Implement import mapping and register recent CSV biobank exports.
Tomasz GubalaTomasz Gubala
82a5a0c5936Merge pull request #114 in MBB/metabiobank from 141-age-unit-fix to master # By Tomasz Szymczyszyn # Via Tomasz Szym...
Tomasz GubalaTomasz Gubala
d7f2a6a0812Merge pull request #110 in MBB/metabiobank from openid_issues to master # By gubala # Via gubala * commit '23da8a298...
Tomasz SzymczyszynTomasz Szymczyszyn
50b6b86dc74Merge pull request #113 in MBB/metabiobank from no-remote-assets to master * commit 'b33671c45e9aacfa62975bedc8ac6d3...
Tomasz SzymczyszynTomasz Szymczyszyn
7784b020ed8Make SampleCollection#age_unit optional if age_low / age_high is not present
Tomasz SzymczyszynTomasz Szymczyszyn
b33671c45e9Replaced OpenSans font files with ones containing more complete character set (full latin + latin-ext)
Tomasz SzymczyszynTomasz Szymczyszyn
b1acb178fbcUse fonts served from the application host not a CDN
Tomasz GubalaTomasz Gubala
be3f74f53d9Merge pull request #112 in MBB/metabiobank from datatables-update to master # By Tomasz Szymczyszyn # Via Tomasz Szy...
Tomasz GubalaTomasz Gubala
56fc2342b67Merge pull request #111 in MBB/metabiobank from params-sanitizer to master # By Tomasz Szymczyszyn # Via Tomasz Szym...
Tomasz SzymczyszynTomasz Szymczyszyn
c023dbee367Bump jquery.dataTables.js to 1.10.9 (older version does not work with updated jquery-rails)
Tomasz SzymczyszynTomasz Szymczyszyn
45b69122e8aSyntax tweak
Tomasz SzymczyszynTomasz Szymczyszyn
9efaa5486c9Merge branch 'master' into params-sanitizer Conflicts: Gemfile
Tomasz SzymczyszynTomasz Szymczyszyn
0ca3e3db185Add ParamsSanitizer and use it for controllers in owner namespace
Tomasz GubałaTomasz Gubała
23da8a29855fixed deployment es problem
Tomasz GubałaTomasz Gubała
b2acd1ffceesolving 3.9 from report v. 1.1
Tomasz GubałaTomasz Gubała
b81510a425csolving 3.1 from report v. 1.1
Tomasz GubalaTomasz Gubala
b52b136d780Merge pull request #109 in MBB/metabiobank from ar-session-store to master # By Tomasz Szymczyszyn # Via Tomasz Szym...
Tomasz SzymczyszynTomasz Szymczyszyn
0b08836a487Use database for session storage.
Tomasz GubalaTomasz Gubala
d62ea1cfff4Merge pull request #106 in MBB/metabiobank from xss-fixes to master # By Tomasz Szymczyszyn # Via Tomasz Szymczyszyn...
Tomasz SzymczyszynTomasz Szymczyszyn
776e64e4dceEnsures that logo uploads have correct file extension in addition to content type (to prevent spoofing)
Tomasz GubalaTomasz Gubala
b61b03e4bfeMerge pull request #107 in MBB/metabiobank from specs to master # By Tomasz Szymczyszyn # Via Tomasz Szymczyszyn * c...
Tomasz GubalaTomasz Gubala
e93a790d2bcMerge pull request #108 in MBB/metabiobank from remove-sample-index to master # By Tomasz Szymczyszyn # Via Tomasz S...
Tomasz SzymczyszynTomasz Szymczyszyn
8621b397a32Update jquery-rails and paperclip gems (previously used versions had known security vulnerabilities)
Tomasz SzymczyszynTomasz Szymczyszyn
96af0f255c1Do not create separate ES index for samples since it is not needed anyway Conflicts: app/models/material_type.rb a...
Tomasz SzymczyszynTomasz Szymczyszyn
88299dd8569Fix unused translations issues
Tomasz SzymczyszynTomasz Szymczyszyn
8798e934362Fix SampleCollectionDecorator specs
Tomasz SzymczyszynTomasz Szymczyszyn
0db50134fdeFix SamplesCollectionsDecorator spec
Tomasz SzymczyszynTomasz Szymczyszyn
3f2a2aa1087Fix DiseaseDecorator specs
Tomasz SzymczyszynTomasz Szymczyszyn
ed7533bfb5dPrevent XSS in js code handling confirm dialogs
Tomasz SzymczyszynTomasz Szymczyszyn
375aae8da54Prevent XSS in fields handled by select2
Tomasz SzymczyszynTomasz Szymczyszyn
e8f6d4cbc57Add some HTML escaping in decorators
Tomasz SzymczyszynTomasz Szymczyszyn
0be1ba535e4Fix missing method error
Tomasz GubalaTomasz Gubala
946a29e72a2Merge pull request #105 in MBB/metabiobank from presentation to master # By gubala (3) and bchucherko (1) # Via bchu...
bchucherkobchucherko
9efb60cd56esass cleanup
bchucherkobchucherko
fba49c5b693presentation slides
Tomasz SzymczyszynTomasz Szymczyszyn
d30ef895502Merge pull request #103 in MBB/metabiobank from 131-responsive-tables to master # By Tomasz Szymczyszyn (2) and bchu...
bchucherkobchucherko
266bec1739clong names in table fix
Tomasz GubałaTomasz Gubała
1f97ca4efe5one sentence introduction to slides
Tomasz SzymczyszynTomasz Szymczyszyn
ce49b5e35f1Merge pull request #104 in MBB/metabiobank from 134-cross-browser-history to master * commit 'd03ca26cd6630ce3814b09...
Tomasz SzymczyszynTomasz Szymczyszyn
dcdeeb471d2Wrap static (i.e. non datatables.js managed) tables too
Tomasz SzymczyszynTomasz Szymczyszyn
d03ca26cd66Add a NOTE
Tomasz GubałaTomasz Gubała
a775632a894temporary diagram images based on old version for testing
Tomasz GubałaTomasz Gubała
b3ad4712512presentation carousel widget with preliminary styling
Tomasz SzymczyszynTomasz Szymczyszyn
db9399ba426Cross-browser compatible (hopefully) history management
Tomasz SzymczyszynTomasz Szymczyszyn
59fe903f33bWrap tables in <div class='table-overflow'>
bchucherkobchucherko
c3b4ba5afa5MBB-130 fix problematic dropdown menu navigation
bchucherkobchucherko
9740f5d7dc2MBB-128 old android icon fix
bchucherkobchucherko
00730519c68MBB-129 fix jumbotron typography
bchucherkobchucherko
5a187b97c8dtable overflow fix
bchucherkobchucherko
fedd297922atable overflow
bchucherkobchucherko
896d9cc00e5boxed-content flex
bchucherkobchucherko
964190e33e7form responsive adj
bchucherkobchucherko
857a6eb66f3sample list collections adj & logo
bchucherkobchucherko
032b60edb9cvarious responsive adj
bchucherkobchucherko
037e3a3ed6fsearch bar adj
bchucherkobchucherko
8461b3a6434footer adj
bchucherkobchucherko
dedf56891d3navbar adj
bchucherkobchucherko
098d197c4d7header adj
bchucherkobchucherko
af97ff5ad13search bar adjustments
bchucherkobchucherko
f7c7e35307cMBB-126 IE logos
Tomasz GubałaTomasz Gubała
33ea8475f87fixed typo in about us page; d2m
Tomasz GubalaTomasz Gubala
5ba9976750cMerge pull request #102 in MBB/metabiobank from 114-age-range-validation to master # By Tomasz Szymczyszyn # Via Tom...
Tomasz SzymczyszynTomasz Szymczyszyn
f6c354bef63Add error style for age unit field
Tomasz SzymczyszynTomasz Szymczyszyn
5c0d77bdf57Better age range validation messages positioning
Tomasz GubalaTomasz Gubala
1e748f0540eMerge pull request #101 in MBB/metabiobank from Sass-styles to master # By gubala (16) and others # Via Tomasz Szymc...
Tomasz SzymczyszynTomasz Szymczyszyn
e358355da8fReintroduce removed IE hack
Tomasz SzymczyszynTomasz Szymczyszyn
58185e2f895Remove superfluous markup
Tomasz SzymczyszynTomasz Szymczyszyn
7070aa2b8bdMerge pull request #100 in MBB/metabiobank from cookies_consent to master # By gubala # Via gubala * commit '551ddbb...
bchucherkobchucherko
4b5e250f1bcMBB-125 remove unnecessary attr
bchucherkobchucherko
cb44f6caa30MBB-124 fix broken file upload input
bchucherkobchucherko
204d6374473Merge remote-tracking branch 'origin/master' into Sass-styles # Conflicts: # app/assets/stylesheets/partials/_ui-ele...
bchucherkobchucherko
429504bca97fix responsive menu
Tomasz SzymczyszynTomasz Szymczyszyn
dc412b34a3dMerge pull request #99 in MBB/metabiobank from view-fixes to master * commit '6da062028f3af8a20b9639246e9583be87974e...
Tomasz GubałaTomasz Gubała
551ddbba914consent message and styling
Tomasz SzymczyszynTomasz Szymczyszyn
6da062028f3Fix IE issue with front page search (MBB-120)
Tomasz SzymczyszynTomasz Szymczyszyn
fac05ef8f9bIE view fixes: * section header overflow * last datatable column width (MBB-119)
Tomasz SzymczyszynTomasz Szymczyszyn
55687affdf2Merge pull request #85 in MBB/metabiobank from Sass-styles-disease-description to Sass-styles # By gubala (16) and o...
Tomasz SzymczyszynTomasz Szymczyszyn
48d098b724cFix OpenSans url so that polish characters are available (MBB-122)
Tomasz SzymczyszynTomasz Szymczyszyn
b2fe2e4d598Prevent breaking of multi select fields on form submit (MBB-123)
Tomasz GubałaTomasz Gubała
b14c0e048a6wider tooltips for better disease description
Tomasz GubałaTomasz Gubała
212e116e016no tooltip on 1 disease; tooltip on >1 disease text
Tomasz SzymczyszynTomasz Szymczyszyn
3db88fef90bMake age unit select's placeholder item unselectable (MBB-115)
Tomasz GubałaTomasz Gubała
db0162f9553each disease in new line in tooltip
Tomasz SzymczyszynTomasz Szymczyszyn
ed8df656baeFile upload input styling (MBB-116)
Tomasz SzymczyszynTomasz Szymczyszyn
4672ab3e11fFix truncated section heading when split into multiple lines (MBB-117)
Tomasz SzymczyszynTomasz Szymczyszyn
177d587c849Single disease shown inline, multiple diseases in a tooltip
Tomasz SzymczyszynTomasz Szymczyszyn
b704f60272bFix private status alert toggling
bchucherkobchucherko
41c1499a98fcollections form fix
Tomasz GubałaTomasz Gubała
a4d07a65b5ffixed styles for biobank administrator management mini-form
bchucherkobchucherko
0469bb92aa3fix file input
bchucherkobchucherko
4dc6152bbccupdate alert colors
Tomasz GubałaTomasz Gubała
114f3ce016calso, a better form label for age range field
Tomasz GubałaTomasz Gubała
7aaa7ba5607similar changes for SC form
Tomasz GubałaTomasz Gubała
4dc393fe5b1simple adjustments
Tomasz SzymczyszynTomasz Szymczyszyn
946f6463dd2Add placeholders for SC age fields
Tomasz GubałaTomasz Gubała
69c63a67a04moved private collection table icon to 3rd column
bchucherkobchucherko
9fe9e4a9c82fix btn group toolip
Tomasz SzymczyszynTomasz Szymczyszyn
5eb0932ae4bChange status field from checkbox to radiobuttons
bchucherkobchucherko
6cec5f98e23edit collections form fixes
bchucherkobchucherko
8616ba826ebmy biobank form fixes
bchucherkobchucherko
0abacecd8f1fix required field icon & some forms
bchucherkobchucherko
4d6a2187f43fix double search results
bchucherkobchucherko
92f30d05478improved flash notifications
Tomasz GubałaTomasz Gubała
f40e303c275paperclip validator fix MBB-110; d2m
Tomasz GubałaTomasz Gubała
29fdcca0559shorter labels in PL profile view to fit into narrow left column
Tomasz GubałaTomasz Gubała
4a50d1cde28added labels to sample collection form
Tomasz GubałaTomasz Gubała
ed723b4bf94better no-biobanks and no-collections messages
Tomasz SzymczyszynTomasz Szymczyszyn
e488f1846cdSearch takes into account published status of sample collection
Tomasz GubałaTomasz Gubała
3de69d445a7fixed flash wrapper dom placement
Tomasz GubałaTomasz Gubała
f1e76c8b0aeadded gs analytics; d2m
Tomasz GubałaTomasz Gubała
2935629416dadded published? method for sc, fixed decorator
bchucherkobchucherko
274c1cf72b6flash notifications fixed
Tomasz SzymczyszynTomasz Szymczyszyn
d89bbc35804Display country name instead of iso code
Tomasz GubałaTomasz Gubała
0fc8a682a39flash alerts display on top of page content
Tomasz SzymczyszynTomasz Szymczyszyn
0fb7d68954aMerge pull request #98 in MBB/metabiobank from better_collection_sharing_layout to master # By gubala # Via gubala *...
Tomasz GubałaTomasz Gubała
43a600127cdbetter buttons placement
Tomasz GubałaTomasz Gubała
a592e9ac73emoved entire staring partial to owner zone
Tomasz GubalaTomasz Gubala
3f169dca70cMerge pull request #97 in MBB/metabiobank from 112-fix-zero-clipboard to master # By Tomasz Szymczyszyn # Via Tomasz...