 gubala | f2a81c3347f | updated to new PLGrid manual link; d2m | | |
gubala | e6c6ae960f2 | removed old openid ca cert | | |
gubala | 291fe0c9bdf | new openid ca cert | | |
 Tomasz Gubala | cc25a651dcf | Merge pull request #122 in MBB/metabiobank from ordering-tweaks to master
# By Tomasz Szymczyszyn
# Via Tomasz Szymc... | | |
Tomasz Gubala | 2423ed7dd76 | Merge pull request #121 in MBB/metabiobank from import-fixes to master
# By Tomasz Szymczyszyn
# Via Tomasz Szymczys... | | |
Tomasz Gubala | 194c7202ab4 | Merge pull request #120 in MBB/metabiobank from data-categories to master
# By Tomasz Szymczyszyn
# Via Tomasz Szymc... | | |
 Tomasz Szymczyszyn | 4945e1929cb | Some more ordering fixes | | |
Tomasz Szymczyszyn | f30de466df5 | Fixes for import mapping view:
* do not show unmapped columns as mapped to comments
* show correct mapping items for... | | |
Tomasz Szymczyszyn | c13ca088d4e | Allow to set data categories for sample collections | | |
gubala | 8977b982f14 | front page tooltip position fix; d2m | | |
gubala | 4102b9572df | biobanks visible_for scope fix; d2m | | |
Tomasz Gubala | 626dce3fdd8 | Merge pull request #119 in MBB/metabiobank from import_seeds to master
# By Piotr Nowakowski
# Via Piotr Nowakowski
... | | |
Tomasz Gubala | 3a500cccf3d | Merge pull request #117 in MBB/metabiobank from biobanks_list to master
# By gubala (4) and Tomasz Szymczyszyn (3)
#... | | |
Tomasz Szymczyszyn | 8cf19e08bd1 | Fix IE10 action box width issue | | |
 Piotr Nowakowski | b2d67574d5b | Provide seeds to load default data import mapping for all existing users in production environment. | | |
Tomasz Gubala | 99bc8c135c1 | Merge pull request #118 in MBB/metabiobank from update_sample_model to master
# By Piotr Nowakowski (1) and gubala (... | | |
gubala | bdffde74125 | new sample presentation table | | |
Piotr Nowakowski | f2ff39073d0 | Refactor Sample model to accommodate MBB import files. | | |
gubala | 18e7df436e8 | removed extra new biobank action | | |
gubala | 2fa62e0ce69 | action labels fix for same height in most cases | | |
Tomasz Szymczyszyn | 6a6de0d45d9 | Merge branch 'biobanks_list' of ssh://git.plgrid.pl:7999/mbb/metabiobank into biobanks_list | | |
Tomasz Szymczyszyn | af49b3b3791 | Restore "Add biobank" action on the main page and tweak css for boxed
content | | |
gubala | 1e19d0f57bd | better navbar name | | |
Tomasz Szymczyszyn | 9bc8a02eb91 | Minor fixes:
* use th instead of td in table header
* guard against nil when summing samples | | |
gubala | a83026d7aaf | biobanks list | | |
Tomasz Gubala | 26f6706769c | Merge pull request #116 in MBB/metabiobank from nueves-fixes to master
# By Tomasz Szymczyszyn
# Via Tomasz Szymczys... | | |
Tomasz Szymczyszyn | 8e19dd2d6b1 | Escape special chars in search queries | | |
Tomasz Szymczyszyn | 6a7a99cfc30 | I18n tweaks | | |
Tomasz Szymczyszyn | a84dca841a2 | Fix SC factory producing invalid records | | |
Tomasz Szymczyszyn | 65870623b7e | Show blank sample collection as invalid in import form | | |
Tomasz Szymczyszyn | 10bd0f78b1a | Validate numericality of SampleCollection#samples_count_override | | |
Tomasz Szymczyszyn | 1bc64031783 | Ensure sensible default record ordering | | |
Tomasz Szymczyszyn | b3b2a6613d2 | Add missing translation for spoofed file error message | | |
Tomasz Szymczyszyn | a1938541417 | Fix i18n missing/unused keys | | |
Tomasz Szymczyszyn | cf3e32038d1 | Merge pull request #115 in MBB/metabiobank from data_import to master
# By Tomasz Szymczyszyn (22) and others
# Via ... | | |
Piotr Nowakowski | de44a290a19 | Fix bug in string sanitization code. | | |
Piotr Nowakowski | ba657149a6b | Fix bugs in assignment of patient age and anatomical part | | |
Piotr Nowakowski | 49b0cc97b74 | Fix bug in parsing age info | | |
Piotr Nowakowski | 0fbe58eaa3c | Fix bug in parsing storage temperature info | | |
gubala | d7f280c8630 | turned submenu on for imports views | | |
gubala | 63184981914 | typo fixed | | |
gubala | a8f9f3e62da | showing the second hint now | | |
gubala | 14e02acf829 | added two missing EN locales | | |
gubala | 775a730d4d7 | translated or | | |
Piotr Nowakowski | 10a6b3ef67e | Merge remote-tracking branch 'origin/data_import' into data_import | | |
Piotr Nowakowski | 3d63b08b1d5 | Provide information regarding all required mapping terms | | |
Tomasz Szymczyszyn | abd6aed2025 | Protect against XSS via CSV upload | | |
Tomasz Szymczyszyn | fb1f3336762 | Allow to import samples into a new collection even if some collections
already exist | | |
Piotr Nowakowski | 1d98415ab2c | Fix issues identified during code review; provide additional descriptions for users. | | |
Tomasz Szymczyszyn | 63977e57845 | Add specs for owner/imports#edit | | |
Tomasz Szymczyszyn | 2e53e98c776 | Better order of terms in mapping select | | |
Tomasz Szymczyszyn | 5c2a88c57f4 | Add specs for owner/imports#update | | |
Tomasz Szymczyszyn | 9874ba37078 | Table layout tweak | | |
Tomasz Szymczyszyn | 8d9a399690b | Add some specs for owner/imports#{new,create} | | |
Tomasz Szymczyszyn | 6de62936bbf | Purge old imports | | |
Tomasz Szymczyszyn | add5259d316 | Add import error summary when some samples could not be processed | | |
Tomasz Szymczyszyn | e973ec787ba | Show validation error when single term is chose multiple times in a
mapping | | |
Tomasz Szymczyszyn | 58449252a2c | Has header checkbox position tweak | | |
Tomasz Szymczyszyn | c4ad3b872b3 | Allow to create new import mapping / use existing one | | |
Tomasz Szymczyszyn | e22bf311144 | Tweak Import model:
* make it belong to sample collection instead of biobank
* allow to create it given name of new ... | | |
Tomasz Szymczyszyn | fb8aec8b9d7 | Some wording tweaks | | |
Tomasz Szymczyszyn | 4a4a0aeb05f | WIP (semi working) Allow to create new import mapping / use existing one | | |
Tomasz Szymczyszyn | be89d266d71 | Initial work on mapping validation | | |
Tomasz Szymczyszyn | 6b45e421bcb | Make new mapping form persistent | | |
Tomasz Szymczyszyn | 24a607dfc2a | Add quiet_assets gem | | |
Tomasz Szymczyszyn | 4fa7323141a | WIP Add ImportsController and views | | |
Tomasz Szymczyszyn | 23020c38758 | Add ImportMappingItem#column_name attribute | | |
Tomasz Szymczyszyn | 2c7ea122589 | Add Import model and basic specs | | |
Tomasz Szymczyszyn | f97935bd347 | Add missing presence validation for ImportMapping#label | | |
Piotr Nowakowski | d6658f58dfb | Remove patient IDs in export files and delete some extraneous whitespace | | |
Piotr Nowakowski | ae6a4add965 | Implement import mapping and register recent CSV biobank exports. | | |
Tomasz Gubala | 82a5a0c5936 | Merge pull request #114 in MBB/metabiobank from 141-age-unit-fix to master
# By Tomasz Szymczyszyn
# Via Tomasz Szym... | | |
Tomasz Gubala | d7f2a6a0812 | Merge pull request #110 in MBB/metabiobank from openid_issues to master
# By gubala
# Via gubala
* commit '23da8a298... | | |
Tomasz Szymczyszyn | 50b6b86dc74 | Merge pull request #113 in MBB/metabiobank from no-remote-assets to master
* commit 'b33671c45e9aacfa62975bedc8ac6d3... | | |
Tomasz Szymczyszyn | 7784b020ed8 | Make SampleCollection#age_unit optional if age_low / age_high is not
present | | |
Tomasz Szymczyszyn | b33671c45e9 | Replaced OpenSans font files with ones containing more complete
character set (full latin + latin-ext) | | |
Tomasz Szymczyszyn | b1acb178fbc | Use fonts served from the application host not a CDN | | |
Tomasz Gubala | be3f74f53d9 | Merge pull request #112 in MBB/metabiobank from datatables-update to master
# By Tomasz Szymczyszyn
# Via Tomasz Szy... | | |
Tomasz Gubala | 56fc2342b67 | Merge pull request #111 in MBB/metabiobank from params-sanitizer to master
# By Tomasz Szymczyszyn
# Via Tomasz Szym... | | |
Tomasz Szymczyszyn | c023dbee367 | Bump jquery.dataTables.js to 1.10.9 (older version does not work with
updated jquery-rails) | | |
Tomasz Szymczyszyn | 45b69122e8a | Syntax tweak | | |
Tomasz Szymczyszyn | 9efaa5486c9 | Merge branch 'master' into params-sanitizer
Conflicts:
Gemfile | | |
Tomasz Szymczyszyn | 0ca3e3db185 | Add ParamsSanitizer and use it for controllers in owner namespace | | |
gubala | 23da8a29855 | fixed deployment es problem | | |
gubala | b2acd1ffcee | solving 3.9 from report v. 1.1 | | |
gubala | b81510a425c | solving 3.1 from report v. 1.1 | | |
Tomasz Gubala | b52b136d780 | Merge pull request #109 in MBB/metabiobank from ar-session-store to master
# By Tomasz Szymczyszyn
# Via Tomasz Szym... | | |
Tomasz Szymczyszyn | 0b08836a487 | Use database for session storage. | | |
Tomasz Gubala | d62ea1cfff4 | Merge pull request #106 in MBB/metabiobank from xss-fixes to master
# By Tomasz Szymczyszyn
# Via Tomasz Szymczyszyn... | | |
Tomasz Szymczyszyn | 776e64e4dce | Ensures that logo uploads have correct file extension in addition to
content type (to prevent spoofing) | | |
Tomasz Gubala | b61b03e4bfe | Merge pull request #107 in MBB/metabiobank from specs to master
# By Tomasz Szymczyszyn
# Via Tomasz Szymczyszyn
* c... | | |
Tomasz Gubala | e93a790d2bc | Merge pull request #108 in MBB/metabiobank from remove-sample-index to master
# By Tomasz Szymczyszyn
# Via Tomasz S... | | |
Tomasz Szymczyszyn | 8621b397a32 | Update jquery-rails and paperclip gems (previously used versions had known
security vulnerabilities) | | |
Tomasz Szymczyszyn | 96af0f255c1 | Do not create separate ES index for samples since it is not needed
anyway
Conflicts:
app/models/material_type.rb
a... | | |
Tomasz Szymczyszyn | 88299dd8569 | Fix unused translations issues | | |
Tomasz Szymczyszyn | 8798e934362 | Fix SampleCollectionDecorator specs | | |
Tomasz Szymczyszyn | 0db50134fde | Fix SamplesCollectionsDecorator spec | | |
Tomasz Szymczyszyn | 3f2a2aa1087 | Fix DiseaseDecorator specs | | |
Tomasz Szymczyszyn | ed7533bfb5d | Prevent XSS in js code handling confirm dialogs | | |
Tomasz Szymczyszyn | 375aae8da54 | Prevent XSS in fields handled by select2 | | |
Tomasz Szymczyszyn | e8f6d4cbc57 | Add some HTML escaping in decorators | | |
Tomasz Szymczyszyn | 0be1ba535e4 | Fix missing method error | | |
Tomasz Gubala | 946a29e72a2 | Merge pull request #105 in MBB/metabiobank from presentation to master
# By gubala (3) and bchucherko (1)
# Via bchu... | | |
 bchucherko | 9efb60cd56e | sass cleanup | | |
bchucherko | fba49c5b693 | presentation slides | | |
Tomasz Szymczyszyn | d30ef895502 | Merge pull request #103 in MBB/metabiobank from 131-responsive-tables to master
# By Tomasz Szymczyszyn (2) and bchu... | | |
bchucherko | 266bec1739c | long names in table fix | | |
gubala | 1f97ca4efe5 | one sentence introduction to slides | | |
Tomasz Szymczyszyn | ce49b5e35f1 | Merge pull request #104 in MBB/metabiobank from 134-cross-browser-history to master
* commit 'd03ca26cd6630ce3814b09... | | |
Tomasz Szymczyszyn | dcdeeb471d2 | Wrap static (i.e. non datatables.js managed) tables too | | |
Tomasz Szymczyszyn | d03ca26cd66 | Add a NOTE | | |
gubala | a775632a894 | temporary diagram images based on old version for testing | | |
gubala | b3ad4712512 | presentation carousel widget with preliminary styling | | |
Tomasz Szymczyszyn | db9399ba426 | Cross-browser compatible (hopefully) history management | | |
Tomasz Szymczyszyn | 59fe903f33b | Wrap tables in <div class='table-overflow'> | | |
bchucherko | c3b4ba5afa5 | MBB-130 fix problematic dropdown menu navigation | | |
bchucherko | 9740f5d7dc2 | MBB-128 old android icon fix | | |
bchucherko | 00730519c68 | MBB-129 fix jumbotron typography | | |
bchucherko | 5a187b97c8d | table overflow fix | | |
bchucherko | fedd297922a | table overflow | | |
bchucherko | 896d9cc00e5 | boxed-content flex | | |
bchucherko | 964190e33e7 | form responsive adj | | |
bchucherko | 857a6eb66f3 | sample list collections adj & logo | | |
bchucherko | 032b60edb9c | various responsive adj | | |
bchucherko | 037e3a3ed6f | search bar adj | | |
bchucherko | 8461b3a6434 | footer adj | | |
bchucherko | dedf56891d3 | navbar adj | | |
bchucherko | 098d197c4d7 | header adj | | |
bchucherko | af97ff5ad13 | search bar adjustments | | |
bchucherko | f7c7e35307c | MBB-126 IE logos | | |
gubala | 33ea8475f87 | fixed typo in about us page; d2m | | |
Tomasz Gubala | 5ba9976750c | Merge pull request #102 in MBB/metabiobank from 114-age-range-validation to master
# By Tomasz Szymczyszyn
# Via Tom... | | |
Tomasz Szymczyszyn | f6c354bef63 | Add error style for age unit field | | |
Tomasz Szymczyszyn | 5c0d77bdf57 | Better age range validation messages positioning | | |
Tomasz Gubala | 1e748f0540e | Merge pull request #101 in MBB/metabiobank from Sass-styles to master
# By gubala (16) and others
# Via Tomasz Szymc... | | |
Tomasz Szymczyszyn | e358355da8f | Reintroduce removed IE hack | | |
Tomasz Szymczyszyn | 58185e2f895 | Remove superfluous markup | | |
Tomasz Szymczyszyn | 7070aa2b8bd | Merge pull request #100 in MBB/metabiobank from cookies_consent to master
# By gubala
# Via gubala
* commit '551ddbb... | | |
bchucherko | 4b5e250f1bc | MBB-125 remove unnecessary attr | | |
bchucherko | cb44f6caa30 | MBB-124 fix broken file upload input | | |
bchucherko | 204d6374473 | Merge remote-tracking branch 'origin/master' into Sass-styles
# Conflicts:
# app/assets/stylesheets/partials/_ui-ele... | | |
bchucherko | 429504bca97 | fix responsive menu | | |
Tomasz Szymczyszyn | dc412b34a3d | Merge pull request #99 in MBB/metabiobank from view-fixes to master
* commit '6da062028f3af8a20b9639246e9583be87974e... | | |
gubala | 551ddbba914 | consent message and styling | | |
Tomasz Szymczyszyn | 6da062028f3 | Fix IE issue with front page search (MBB-120) | | |
Tomasz Szymczyszyn | fac05ef8f9b | IE view fixes:
* section header overflow
* last datatable column width (MBB-119) | | |
Tomasz Szymczyszyn | 55687affdf2 | Merge pull request #85 in MBB/metabiobank from Sass-styles-disease-description to Sass-styles
# By gubala (16) and o... | | |
Tomasz Szymczyszyn | 48d098b724c | Fix OpenSans url so that polish characters are available (MBB-122) | | |
Tomasz Szymczyszyn | b2fe2e4d598 | Prevent breaking of multi select fields on form submit (MBB-123) | | |
gubala | b14c0e048a6 | wider tooltips for better disease description | | |
gubala | 212e116e016 | no tooltip on 1 disease; tooltip on >1 disease text | | |
Tomasz Szymczyszyn | 3db88fef90b | Make age unit select's placeholder item unselectable (MBB-115) | | |
gubala | db0162f9553 | each disease in new line in tooltip | | |
Tomasz Szymczyszyn | ed8df656bae | File upload input styling (MBB-116) | | |
Tomasz Szymczyszyn | 4672ab3e11f | Fix truncated section heading when split into multiple lines (MBB-117) | | |
Tomasz Szymczyszyn | 177d587c849 | Single disease shown inline, multiple diseases in a tooltip | | |
Tomasz Szymczyszyn | b704f60272b | Fix private status alert toggling | | |
bchucherko | 41c1499a98f | collections form fix | | |
gubala | a4d07a65b5f | fixed styles for biobank administrator management mini-form | | |
bchucherko | 0469bb92aa3 | fix file input | | |
bchucherko | 4dc6152bbcc | update alert colors | | |
gubala | 114f3ce016c | also, a better form label for age range field | | |
gubala | 7aaa7ba5607 | similar changes for SC form | | |
gubala | 4dc393fe5b1 | simple adjustments | | |
Tomasz Szymczyszyn | 946f6463dd2 | Add placeholders for SC age fields | | |
gubala | 69c63a67a04 | moved private collection table icon to 3rd column | | |
bchucherko | 9fe9e4a9c82 | fix btn group toolip | | |
Tomasz Szymczyszyn | 5eb0932ae4b | Change status field from checkbox to radiobuttons | | |
bchucherko | 6cec5f98e23 | edit collections form fixes | | |
bchucherko | 8616ba826eb | my biobank form fixes | | |
bchucherko | 0abacecd8f1 | fix required field icon & some forms | | |
bchucherko | 4d6a2187f43 | fix double search results | | |
bchucherko | 92f30d05478 | improved flash notifications | | |
gubala | f40e303c275 | paperclip validator fix MBB-110; d2m | | |
gubala | 29fdcca0559 | shorter labels in PL profile view to fit into narrow left column | | |
gubala | 4a50d1cde28 | added labels to sample collection form | | |
gubala | ed723b4bf94 | better no-biobanks and no-collections messages | | |
Tomasz Szymczyszyn | e488f1846cd | Search takes into account published status of sample collection | | |
gubala | 3de69d445a7 | fixed flash wrapper dom placement | | |
gubala | f1e76c8b0ae | added gs analytics; d2m | | |
gubala | 2935629416d | added published? method for sc, fixed decorator | | |
bchucherko | 274c1cf72b6 | flash notifications fixed | | |
Tomasz Szymczyszyn | d89bbc35804 | Display country name instead of iso code | | |
gubala | 0fc8a682a39 | flash alerts display on top of page content | | |
Tomasz Szymczyszyn | 0fb7d68954a | Merge pull request #98 in MBB/metabiobank from better_collection_sharing_layout to master
# By gubala
# Via gubala
*... | | |
gubala | 43a600127cd | better buttons placement | | |
gubala | a592e9ac73e | moved entire staring partial to owner zone | | |
Tomasz Gubala | 3f169dca70c | Merge pull request #97 in MBB/metabiobank from 112-fix-zero-clipboard to master
# By Tomasz Szymczyszyn
# Via Tomasz... | | |
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